SRR1780997_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780997_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	206629
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	23359	11.304802326875704	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3711	1.795972491760595	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	3381	1.636265964603226	No Hit
CATATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	2055	0.9945361009345252	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	1738	0.8411210430288101	RNA PCR Primer, Index 15 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	1157	0.5599407633971998	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	968	0.4684724796616157	No Hit
CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	737	0.35667791065145743	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGATAATCTCGTATGCCGT	560	0.27101713699432317	No Hit
CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	485	0.23472019900401203	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	344	0.1664819555822271	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTAAATCTCGTATGCCGT	304	0.14712358865406117	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGACGT	276	0.133572731804345	No Hit
TATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCT	239	0.11566624239579149	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	234	0.11324644652977074	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATATCGTATGCCGT	225	0.10889081397093342	No Hit
CTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	223	0.10792289562452512	No Hit
TTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	211	0.10211538554607534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTATA	25	2.8335617E-6	69.99662	1
CGAATGC	55	0.0	63.633278	41
CCGACTT	90	0.0	62.21921	47
TCGAATG	45	3.8380676E-10	62.21921	40
AACTCGT	70	0.0	59.997093	37
TGCCGAC	105	0.0	59.997093	45
AGGGGGG	3115	0.0	58.873554	70
CGACTTC	115	0.0	57.823288	48
GCCGACT	105	0.0	56.66392	46
CGGTTCA	25	2.387004E-4	55.99729	14
AGAATGC	25	2.387004E-4	55.99729	41
ATATACA	610	0.0	54.505558	2
AGCTAGA	45	2.6850103E-8	54.454987	55
AAACTCG	85	0.0	53.52682	36
TCTTTAT	190	0.0	53.41847	1
GACTTAG	20	0.006938692	52.510166	53
GCATGCA	20	0.006938692	52.510166	56
CGTCTAC	60	8.367351E-11	52.497456	48
GCCGACA	20	0.006945339	52.497456	46
GTCCGTA	20	0.006945339	52.497456	13