SRR1780995_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780995_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	369463
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	11538	3.1229108192159973	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2292	0.6203598195218466	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	2088	0.565144547627232	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	966	0.26146055220685155	RNA PCR Primer, Index 30 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	965	0.26118988910932894	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	603	0.16320984780614026	No Hit
CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC	497	0.13451955946874247	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	476	0.12883563442076743	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	130	0.0	59.237988	48
AGGGGGG	1810	0.0	54.715607	70
TGACGTA	20	0.0069449744	52.506397	45
CGTGGCA	20	0.0069486937	52.49929	15
GCGTAGA	20	0.0069486937	52.49929	18
CGTAGAG	20	0.0069524143	52.492184	19
CCGTCTT	2000	0.0	47.6058	47
GCCGTCT	2015	0.0	47.59885	46
CTCGTAT	2455	0.0	46.909992	39
TCTTCTG	1890	0.0	46.844875	50
ATCTCGT	2460	0.0	46.814648	37
CGTATGC	2375	0.0	46.72148	41
TATGCCG	2370	0.0	46.67235	43
GACGACT	30	5.8706687E-4	46.672348	46
TCTCGTA	2475	0.0	46.530922	38
TCGTATG	2480	0.0	46.437107	40
GATCTCG	2545	0.0	46.351425	36
GTCTTCT	1950	0.0	45.954315	49
TGCCGTC	2320	0.0	45.867653	45
CGTCTTC	2000	0.0	45.855587	48