SRR1780994_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780994_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544641
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	36632	6.725898344046813	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7982	1.4655525382775076	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	4252	0.780697744018537	No Hit
CATATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	2511	0.4610376376365349	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2008	0.36868322436247	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	1654	0.3036862814220744	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1060	0.1946236144542919	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	659	0.12099713389186638	Illumina PCR Primer Index 10 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGACGT	580	0.10649216639951821	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	4935	0.0	60.00417	70
AAGCCGT	70	0.0	59.998657	44
GCCGACA	50	9.804353E-10	55.998753	46
GCCGTCT	5585	0.0	52.827827	46
CCGTCTT	5535	0.0	52.73595	47
CGTATGC	5980	0.0	52.55736	41
TGCCGAC	140	0.0	52.498825	45
TATGCCG	5930	0.0	52.410297	43
CGTCTTC	5640	0.0	52.312664	48
CTCGTAT	6200	0.0	52.27783	39
TCGTATG	6185	0.0	52.17824	40
CTTGAAA	5840	0.0	52.019386	57
GTATGCC	5975	0.0	52.015575	42
CTGCTTG	5465	0.0	51.938457	54
TCTCGTA	6255	0.0	51.93007	38
ATCTCGT	6265	0.0	51.79131	37
TGCCGTC	5845	0.0	51.73537	45
TCTTCTG	5590	0.0	51.653587	50
ATGCCGT	5910	0.0	51.521694	44
GTCTTCT	5595	0.0	51.48232	49