SRR1780990_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780990_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	247940
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	47941	19.33572638541583	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	5535	2.2323949342582883	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3286	1.3253206420908283	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	2594	1.046220859885456	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	1661	0.6699201419698314	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1253	0.5053642010163749	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	773	0.31176897636524964	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	692	0.2790997822053723	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	446	0.17988222957167058	RNA PCR Primer, Index 48 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	359	0.1447930951036541	No Hit
CTTATACACATCTCCGAGCCCACGAGACTATCGTCAATCTCGTATGCCGT	351	0.14156650802613535	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	348	0.1403565378720658	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	276	0.11131725417439704	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGACGT	263	0.10607405017342905	No Hit
TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT	258	0.10405743324997983	RNA PCR Primer, Index 48 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTACA	15	0.0022200213	70.0224	57
TGCCGTA	20	7.9196514E-5	69.994156	45
AACTCGT	60	0.0	64.16131	37
AGGGGGG	5670	0.0	63.01943	70
ACGTATG	45	3.8380676E-10	62.21702	40
AAACTCG	80	0.0	61.244884	36
CGTATGA	105	0.0	56.66193	41
AAGGGGG	6645	0.0	53.66745	69
CACGGGT	20	0.0069368538	52.5168	26
GCCGGTA	20	0.0069368538	52.5168	55
TCGGCTT	20	0.0069368538	52.5168	24
TGCGCGA	20	0.0069368538	52.5168	28
CCGGTAC	20	0.0069368538	52.5168	56
ATATCGA	20	0.0069479337	52.495617	37
CTTGACA	20	0.0069479337	52.495617	63
CGACTTA	20	0.0069479337	52.495617	48
CTTGAAA	7125	0.0	51.742867	57
CTGCTTG	6980	0.0	51.613926	54
TTGAAAA	7195	0.0	51.58009	58
CGTCTTC	7025	0.0	51.561523	48