SRR1780989_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780989_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	366905
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	19781	5.391313827830093	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	3158	0.8607132636513539	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2001	0.5453727804199998	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1145	0.31206988184952505	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	1070	0.2916286232130933	TruSeq Adapter, Index 2 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	763	0.20795573786129926	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	613	0.16707322058843568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	40	1.3460522E-10	70.00695	37
AACTCGA	15	0.0022228186	70.00695	37
GCAGCGT	40	1.3460522E-10	69.99741	1
GACGACA	15	0.0022240204	69.997406	26
GCCGTAT	15	0.0022240204	69.997406	46
TGCCGTA	15	0.0022240204	69.997406	45
AATCTCG	80	0.0	61.25608	36
AGGGGGG	2775	0.0	60.42041	70
AAGCCGT	35	2.971119E-7	59.997784	44
TAACTCG	65	0.0	59.236652	36
ACGTATG	45	2.6946509E-8	54.44985	40
GCCGTCA	105	0.0	53.33136	46
CTGGCTA	20	0.0069455556	52.505215	9
CGTAACT	60	8.367351E-11	52.50521	34
CTCCTGG	20	0.0069493004	52.49806	1
ACGTAAC	60	8.367351E-11	52.498055	33
TATGCCG	3425	0.0	50.78644	43
GCCGTCT	3295	0.0	50.77202	46
CCGTCTT	3290	0.0	50.742805	47
CGAATCT	90	0.0	50.560574	34