SRR1780988_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780988_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	275775
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	25336	9.187199709908441	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	3270	1.1857492521076964	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1554	0.5635028555887952	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1424	0.5163629770646361	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	1116	0.40467772640739735	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	714	0.2589067174326897	No Hit
ATTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	529	0.1918230441483093	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	429	0.15556159912972534	No Hit
CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	311	0.1127730940077962	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCAGA	15	0.0022216446	70.01161	1
GGCATAT	15	0.0022216446	70.01161	1
AGGGGGG	3165	0.0	60.157043	70
AGCCGTC	35	2.967936E-7	59.999065	45
CCGACTT	30	8.364052E-6	58.332428	47
ACGTATG	30	8.364052E-6	58.332428	40
CGGAATC	20	0.006946889	52.499184	20
CCCTCGA	20	0.006946889	52.499184	19
CAGCACG	20	0.006946889	52.499184	44
CTTATGG	20	0.006946889	52.499184	35
AGTGACG	20	0.006946889	52.499184	17
GCGTCTC	20	0.006946889	52.499184	17
CCGTTCC	20	0.006946889	52.499184	59
GCCGTAT	20	0.006946889	52.499184	46
GAGATCC	20	0.006946889	52.499184	62
TGCCGAC	40	7.464223E-7	52.499184	45
CGTATGA	90	0.0	50.554768	41
GCCGTCT	3870	0.0	50.10258	46
CCGTCTT	3845	0.0	50.06424	47
CTTGAAA	4025	0.0	49.999226	57