SRR1780984_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780984_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483086
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	42950	8.890756511263005	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	5355	1.108498279809392	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2560	0.5299263485176553	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	2416	0.5001179914135371	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	1511	0.3127807471133504	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1171	0.24239990395084932	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	816	0.1689140235900026	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	639	0.1322745846495241	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTGC	15	0.0022233913	70.0058	34
TGCCGAC	55	0.0	63.635044	45
AGGGGGG	5495	0.0	61.915955	70
GCCGACT	60	1.8189894E-12	58.332127	46
AGATCGT	25	2.3898897E-4	55.99884	32
TGACGAC	25	2.3898897E-4	55.99884	45
ATATCGT	80	0.0	52.50435	37
TCGTATC	20	0.0069473335	52.50435	40
TCGCCGT	20	0.006950178	52.498917	50
GTCGAGG	20	0.006950178	52.498917	7
GGTCGAG	20	0.006950178	52.498917	6
GCGAATC	20	0.006950178	52.498917	25
TCGAGGG	20	0.006950178	52.498917	8
CGCCGTC	20	0.006950178	52.498917	51
GCGTCTA	20	0.006950178	52.498917	14
CCCGAGG	20	0.006950178	52.498917	58
CCGTCTT	6550	0.0	52.258457	47
GCCGTCT	6595	0.0	52.167233	46
CGTCTTC	6655	0.0	52.012447	48
TATGCCG	6675	0.0	51.90904	43