SRR1780982_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780982_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	751973
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	58441	7.771688611160241	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10910	1.4508499640279637	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	6590	0.8763612523321982	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	4297	0.571430091239978	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	1807	0.2403011810264464	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1407	0.18710778179535703	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	752	0.1000035905544481	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCTTTA	20	7.9262754E-5	70.001	55
CCAATTT	15	0.0022250656	69.99634	16
TAACCGA	15	0.0022250656	69.99634	11
AGGGGGG	7225	0.0	61.862473	70
GTATTCT	60	1.8189894E-12	58.338043	49
TGCCGAC	80	0.0	56.875813	45
GATTCCA	25	2.3903359E-4	56.000797	1
GCAGCGT	65	3.6379788E-12	53.84692	1
CTTTATA	190	0.0	53.418262	2
CGTCTTC	8450	0.0	53.270573	48
CCGTCTT	8400	0.0	53.00428	47
GCCGTCT	8430	0.0	52.981735	46
TATGCCG	8730	0.0	52.921715	43
TCTTCTG	8355	0.0	52.867302	50
CTCGTAT	8900	0.0	52.818874	39
CGTATGC	8805	0.0	52.74919	41
TCGTATG	8950	0.0	52.680233	40
CTGCTTG	8385	0.0	52.552925	54
TCTCGTA	8965	0.0	52.513996	38
ACGTATG	40	7.4767013E-7	52.504242	40