SRR1780981_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780981_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	362892
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	49102	13.5307474400097	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	5570	1.534891923767953	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3185	0.8776715937524111	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	3104	0.8553509032990532	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	1568	0.432084476924264	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1265	0.3485885607839247	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	765	0.21080652094838132	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	750	0.206673059753315	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	411	0.11325683674481664	RNA PCR Primer, Index 24 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGACGT	388	0.10691886291238165	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	388	0.10691886291238165	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTA	60	70.00496	45
GCCGTAT	60	64.17121	46
AGGGGGG	5995	63.398598	70
AGCCGTC	65	59.234966	45
CTTTATA	245	55.718235	2
CCGTCTT	7090	53.861362	47
CGTCTTC	7110	53.808315	48
GCCGTCT	7105	53.796917	46
TCTTCTG	7130	53.502728	50
AAGGGGG	7095	53.4707	69
GTCTTCT	7140	53.43516	49
CTGCTTG	7115	53.22202	54
ATGCCGT	7360	53.217083	44
CTTCTGC	7150	53.206226	51
TCTCGTA	7525	53.027008	38
TATGCCG	7415	53.011173	43
TGCCGTC	7325	52.99352	45
CTCGTAT	7500	52.97042	39
CATCTCG	7555	52.95544	36
ATCTCGT	7555	52.90911	37