SRR1780978_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780978_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	511186
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	21953	4.294522932944173	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10073	1.970515624449809	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	2711	0.5303353378222408	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	2488	0.4867112949102675	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1407	0.27524227971814563	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	1027	0.20090534560805653	RNA PCR Primer, Index 48 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	862	0.16862746632341263	No Hit
CAAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	625	0.12226469426001493	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	557	0.10896229552452533	No Hit
TCATATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	531	0.1038760842433087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAA	15	0.002223567	70.00499	30
ACGTATG	35	2.96719E-7	60.016026	40
AGGGGGG	3900	0.0	58.965744	70
AACTCGT	45	2.6939233E-8	54.458984	37
ATATCCG	45	2.7002898E-8	54.442997	10
TCGACCA	20	0.0069425046	52.51402	40
CGTCTTC	4255	0.0	52.400913	48
CCGTCTT	4230	0.0	52.048626	47
TATGCCG	4305	0.0	51.87362	43
GCCGTCT	4255	0.0	51.825077	46
CGTATGC	4365	0.0	51.641712	41
ATCTCGT	4335	0.0	51.60547	37
TCGTATG	4415	0.0	51.542637	40
TCTTCTG	4340	0.0	51.525852	50
AATCTCG	4340	0.0	51.384686	36
ATGCCGT	4320	0.0	51.288376	44
CTCGTAT	4390	0.0	51.277927	39
TCTCGTA	4370	0.0	51.27227	38
GTCTTCT	4385	0.0	51.246525	49
TGCCGTC	4330	0.0	51.16993	45