SRR1780975_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780975_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401133
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	21545	5.371036539003273	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11462	2.857406396382247	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	2858	0.712481895032321	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	2625	0.6543964221343046	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1604	0.39986737565844743	No Hit
CATATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	846	0.21090261833357016	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	827	0.20616603470669329	Illumina PCR Primer Index 9 (95% over 22bp)
CAAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	620	0.15456220256124525	No Hit
TCATATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	601	0.1498256189343684	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	489	0.12190470492330474	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	466	0.11617094579603274	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAT	20	7.922755E-5	69.99925	39
TAACGTA	15	0.00222394	69.99925	38
CGTAATC	20	7.922755E-5	69.99925	48
TCGAAAG	15	0.00222394	69.99925	40
AGGGGGG	3795	0.0	58.83995	70
CGTACCT	20	0.0069490485	52.49944	52
ACAGACT	20	0.0069490485	52.49944	10
CAATACG	20	0.0069490485	52.49944	69
ACGGTGG	20	0.0069490485	52.49944	15
CCGTCTT	4125	0.0	52.26611	47
CGTCTTC	4175	0.0	52.226986	48
TATGCCG	4220	0.0	52.167686	43
GCCGTCT	4140	0.0	52.161278	46
TCTTCTG	4155	0.0	52.14144	50
CGTATGC	4270	0.0	51.88469	41
ATCTCGT	4220	0.0	51.835938	37
TCGTATG	4310	0.0	51.72798	40
CTCGTAT	4245	0.0	51.69556	39
GATCTCG	4300	0.0	51.685493	36
TCTCGTA	4255	0.0	51.65632	38