SRR1780974_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780974_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169399
Sequences flagged as poor quality	0
Sequence length	76
%GC	64

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	42604	25.150089433821925	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	8483	5.007703705452807	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	938	0.5537222769910094	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	857	0.5059061741804851	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	559	0.3299901416183095	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	353	0.2083837566927786	No Hit
CTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGG	171	0.100945105933329	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAAGCGT	15	0.0022224758	69.99321	21
AAAAAGG	890	0.0	54.280426	70
GTACTAG	20	0.0069364132	52.51041	27
TCTTGCG	20	0.0069445213	52.494907	2
ACTCTCG	20	0.0069445213	52.494907	13
ATATCAG	20	0.0069445213	52.494907	1
GTTGTGA	20	0.0069445213	52.494907	1
ACCGTCG	20	0.0069445213	52.494907	43
TTTTGGC	20	0.0069445213	52.494907	45
CCGCAAA	20	0.0069445213	52.494907	52
GGTAGTC	20	0.0069445213	52.494907	7
TACGTGG	20	0.0069445213	52.494907	20
CGGACTG	20	0.0069445213	52.494907	5
CGTATCA	1260	0.0	46.10664	56
GCCGTAT	1260	0.0	46.10664	54
ATCATTA	1285	0.0	46.02666	59
CGCCGTA	1255	0.0	46.01147	53
CCGTATC	1265	0.0	45.9244	55
TCGCCGT	1260	0.0	45.828888	52
CGGTGGT	1295	0.0	45.671246	46