SRR1780974_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780974_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169399
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	22995	13.574460297876612	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13203	7.794024758115456	No Hit
CTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	2982	1.760340970135597	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2769	1.6346023294116256	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1407	0.8305834154865142	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	930	0.5489996989356489	RNA PCR Primer, Index 42 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	823	0.48583521744520336	No Hit
CAAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	626	0.36954173283195296	No Hit
TCATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	586	0.3459288425551509	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	569	0.33589336418751	No Hit
ATTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	521	0.30755789585534743	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	418	0.24675470339258201	RNA PCR Primer, Index 32 (95% over 21bp)
ATAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	191	0.11275155107173006	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	176	0.10389671721792927	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGACT	55	0.0	63.634483	46
AGGGGGG	3520	0.0	62.839054	70
CGTCTAC	45	3.8198777E-10	62.220387	48
ATCTCGA	40	1.060107E-8	61.24819	37
TCGAATG	40	1.060107E-8	61.24819	40
CTAATAC	445	0.0	60.56001	1
ATCGATC	35	2.961333E-7	59.99823	33
AATCGAT	35	2.961333E-7	59.99823	32
GCCCTAG	30	8.350866E-6	58.33161	1
CGAATGC	30	8.350866E-6	58.33161	41
CGTAAGC	55	3.6379788E-11	57.271038	41
AATACAC	705	0.0	56.1142	3
TATAGGT	25	2.3820685E-4	56.014885	4
TCAATCG	50	9.749783E-10	55.998344	30
TCGTAAG	50	9.749783E-10	55.998344	40
CACGTAT	25	2.3855483E-4	55.998344	39
CAATCGA	50	9.749783E-10	55.998344	31
TAATACA	540	0.0	55.755554	2
AAGGGGG	4035	0.0	54.558483	69
CTCGAAT	45	2.6859198E-8	54.44284	39