SRR1780971_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780971_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411135
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	23290	5.664805963977769	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11502	2.7976212193075267	No Hit
CTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	2852	0.6936894207498754	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	2712	0.6596373453974971	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	1432	0.3483040850328968	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	877	0.21331192917168326	RNA PCR Primer, Index 30 (95% over 22bp)
CATATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	822	0.19993432814039186	No Hit
CAAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	570	0.13864059250611113	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	566	0.13766767606747174	No Hit
TCATATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	540	0.1313437192163158	No Hit
ATTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	478	0.11626351441740548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCAAGC	15	0.002223456	70.0034	37
AGGGGGG	3900	0.0	60.751972	70
GCCGTAT	90	0.0	54.447098	46
CGTCTTC	4015	0.0	54.31148	48
CCGTCTT	4045	0.0	54.254803	47
GCCGTCT	4080	0.0	53.960957	46
TATGCCG	4320	0.0	53.636868	43
CGTATGC	4305	0.0	53.49854	41
TCTTCTG	3920	0.0	53.47824	50
ATGCCGT	4325	0.0	53.251144	44
TCTCGTA	4515	0.0	53.103355	38
TGCCGTC	4250	0.0	53.037876	45
GTCTTCT	3940	0.0	53.035576	49
TCGTATG	4450	0.0	52.935158	40
ATCTCGT	4535	0.0	52.869164	37
CTTGAAA	4270	0.0	52.789455	57
CTCGTAT	4460	0.0	52.73799	39
GTATGCC	4425	0.0	52.68053	42
GATCTCG	4595	0.0	52.635857	36
CTTCTGC	3970	0.0	52.6284	51