SRR1780969_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780969_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283418
Sequences flagged as poor quality	0
Sequence length	76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46960	16.56916639027867	No Hit
CTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTG	7725	2.7256560980601092	No Hit
ATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGTGGTC	1001	0.3531885765900543	No Hit
TCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGGT	704	0.2483963615578404	No Hit
CTCTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	633	0.2233450239575468	No Hit
TCTTTATACACATCTGACGCTGCCGACGATTGATGGAGTGTAGATCTCGG	335	0.11819997318448369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATAGCG	15	0.0022215021	70.01324	38
TTCCGGT	20	0.006941464	52.50993	42
CGGTCTT	20	0.006941464	52.50993	45
CGCTAAG	30	5.86639E-4	46.675495	36
GCGCTAA	30	5.86639E-4	46.675495	35
AGCGCTA	30	5.8714976E-4	46.66726	34
ACCGTGT	30	5.876609E-4	46.65902	49
CGCCGTA	1130	0.0	45.531544	53
GCCGTAT	1140	0.0	45.43917	54
TCGCCGT	1135	0.0	45.330967	52
CGGTGGT	1180	0.0	44.7887	46
GGTGGTC	1190	0.0	44.69856	47
ATCTCGG	1180	0.0	44.499943	42
CTCGGTG	1180	0.0	44.499943	44
TGGTCGC	1180	0.0	44.484234	49
TCTCGGT	1190	0.0	44.420166	43
AGATCTC	1185	0.0	44.304356	40
GTCGCCG	1180	0.0	44.195473	51
GATCTCG	1190	0.0	44.125996	41
CCGTATC	1160	0.0	44.052277	55