SRR1780969_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780969_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283418
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	25336	8.939446330155459	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12630	4.45631540692546	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	3006	1.0606242369927106	No Hit
CTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	2742	0.9674756014085203	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1964	0.6929693950278387	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	1102	0.38882498641582397	RNA PCR Primer, Index 24 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	895	0.31578798806003855	No Hit
CAAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	619	0.21840532358565795	No Hit
TCATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	563	0.19864652209810243	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	535	0.18876712135432472	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	517	0.18241607801903903	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	435	0.1534835472694042	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAA	20	7.914967E-5	70.006004	46
TGACGAC	20	7.9218895E-5	69.993645	45
AGGGGGG	3975	0.0	60.661156	70
GACGACT	25	2.3869419E-4	56.0048	46
TTTCGCC	20	0.0069443057	52.5045	29
CGTAATC	20	0.0069443057	52.5045	48
CGACTTA	20	0.0069443057	52.5045	48
GGGTCTA	20	0.006949154	52.495235	1
ATCGTAA	20	0.006949154	52.495235	39
ACGTATG	40	7.468843E-7	52.495235	40
AAGGGGG	4675	0.0	51.802788	69
CGTCTTC	4485	0.0	51.197254	48
TCTCGTA	4770	0.0	50.99118	38
CCGTCTT	4465	0.0	50.95621	47
CTCGTAT	4740	0.0	50.944744	39
CATCTCG	4775	0.0	50.937786	36
CGTATGC	4660	0.0	50.91813	41
TGCCGAC	55	2.2791937E-9	50.90447	45
ATCTCGT	4775	0.0	50.791203	37
TCGTATG	4785	0.0	50.758198	40