SRR1780964_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780964_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	307268
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	17666	5.749378392803677	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	3445	1.1211710949399223	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1476	0.4803624197768723	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	1318	0.42894151034276273	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	732	0.23822851712511553	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	329	0.10707265318874729	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGTA	15	0.002223759	69.99674	11
TTCAGCG	15	0.002223759	69.99674	9
AAGGTCG	15	0.002223759	69.99674	10
GGCGGTA	15	0.002223759	69.99674	24
AGGGGGG	2265	0.0	58.72647	70
GATTCCG	20	0.006948492	52.49756	15
GAACTCG	55	2.2755557E-9	50.915012	36
ATCTCGA	60	4.9149094E-9	46.67209	37
ACTCGTA	60	4.9149094E-9	46.67209	38
GATCTCG	3210	0.0	45.908764	36
ATCTCGT	3190	0.0	45.8674	37
CTCGTAT	3225	0.0	45.803772	39
CGTATGC	3240	0.0	45.80034	41
TGCCGTC	3175	0.0	45.745903	45
TCGTATG	3275	0.0	45.745773	40
TATGCCG	3170	0.0	45.70765	43
TCTCGTA	3220	0.0	45.657482	38
GCCGTCT	3105	0.0	45.65748	46
CCGTCTT	3075	0.0	45.647583	47
ATGCCGT	3205	0.0	45.645306	44