SRR1780962_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780962_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	197684
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	30720	15.539952651706765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGATAT	20	0.00693503	52.516323	25
GAAATTC	20	0.006941976	52.503036	15
GGCAGAC	20	0.006941976	52.503036	53
GCCATAG	20	0.0069489274	52.489754	2
CGATCCT	20	0.0069489274	52.489754	65
AAGTCTC	20	0.0069489274	52.489754	45
CGCTTCG	35	0.0012513322	40.012436	68
GCGAAGT	35	0.001252891	40.00231	32
ATTCGAT	35	0.001252891	40.00231	32
TGCCGAA	35	0.001252891	40.00231	12
GCGGCTT	35	0.0012544513	39.99219	11
CCACGGG	35	0.0012544513	39.99219	11
GGAAACA	45	9.171138E-5	38.89114	16
TCCGAAC	40	0.0024109238	35.010883	25
TCGTTTA	50	1.7047924E-4	35.002026	32
CGTTTAT	50	1.7047924E-4	35.002026	33
ACCTTTA	50	1.7047924E-4	35.002026	33
GGCTTAT	40	0.002416919	34.993168	1
CCCCACG	40	0.002416919	34.993168	9
CCTTTAG	65	2.0944408E-5	32.309563	34