SRR1780954_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780954_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	793989
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	33654	4.238597763948871	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17087	2.1520449275745634	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	5189	0.6535355023810153	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	4257	0.5361535235374798	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1753	0.22078391514240123	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	1277	0.1608334624283208	RNA PCR Primer, Index 48 (95% over 23bp)
ATTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	998	0.12569443657279888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAA	20	7.927534E-5	69.999245	30
AGGGGGG	5495	0.0	59.939434	70
CTTCGCG	25	2.3907128E-4	55.999397	14
CCGTCTT	5855	0.0	54.337585	47
CGTCTTC	5920	0.0	54.332184	48
GCCGTCT	5900	0.0	54.160435	46
TCGTATG	6075	0.0	53.925343	40
CGTATGC	6015	0.0	53.823193	41
AATCTCG	6040	0.0	53.774258	36
TATGCCG	5965	0.0	53.746277	43
CTTGAAA	6065	0.0	53.66801	57
ATCTCGT	6010	0.0	53.635025	37
CTCGTAT	6050	0.0	53.45397	39
TCTTCTG	6065	0.0	53.437183	50
GTCTTCT	6100	0.0	53.187946	49
ATGCCGT	6050	0.0	53.16472	44
TCTCGTA	6085	0.0	53.146507	38
CTGCTTG	6070	0.0	53.104862	54
TGCCGTC	6065	0.0	53.090935	45
GTATGCC	6060	0.0	52.903713	42