SRR1780953_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780953_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588038
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	32471	5.521922052656461	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17452	2.967835411997184	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	5466	0.9295317649539656	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	4238	0.7207017233580143	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	1966	0.33433213499807835	No Hit
ATTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	1333	0.2266860304946279	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	1152	0.19590570677405203	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	631	0.10730599042918995	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGAG	15	0.002224834	69.996254	66
AGGGGGG	5510	0.0	61.61195	70
TGCCGTA	25	2.3897004E-4	56.001766	45
CGTCTAC	65	3.6379788E-12	53.852436	48
AAGGGGG	6395	0.0	53.030785	69
GCCGTCT	6250	0.0	52.534126	46
TATGCCG	6345	0.0	52.51545	43
GAACGGT	20	0.0069494876	52.50166	6
CCGTCTT	6210	0.0	52.421574	47
CGTCTTC	6295	0.0	52.325405	48
CGTATGC	6445	0.0	52.298008	41
TCGTATG	6545	0.0	52.19416	40
CTCGTAT	6510	0.0	52.09842	39
CTTGAAA	6540	0.0	52.069084	57
TCTCGTA	6510	0.0	51.990887	38
GTATGCC	6420	0.0	51.90195	42
ATCTCGT	6530	0.0	51.885254	37
GTATCTC	6505	0.0	51.81122	35
ATGCCGT	6425	0.0	51.752605	44
CACGAAT	115	0.0	51.736366	32