SRR1780952_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780952_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	203816
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	21930	10.759704831809083	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10088	4.949562350355222	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	3236	1.5877065588570085	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	2968	1.456215409977627	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1103	0.5411743925893944	No Hit
ATTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	881	0.4322526200102053	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	857	0.4204772932448876	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	412	0.20214310947128783	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	290	0.142285198414256	No Hit
ATTAAACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	279	0.13688817364681868	No Hit
CTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	257	0.1260941241119441	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATTCG	15	0.0022223336	69.99951	21
CGCGTGT	15	0.0022223336	69.99951	26
TTCGCGT	15	0.0022223336	69.99951	24
TAAACGG	20	7.913276E-5	69.999504	26
AGGGGGG	3560	0.0	63.41248	70
GCCGACT	35	2.9638977E-7	59.99958	46
GACAACG	30	8.35583E-6	58.332928	18
CGTATGA	80	0.0	56.8746	41
AAACGGC	25	2.3864387E-4	55.999607	27
GTAAACG	25	2.3864387E-4	55.999607	25
AAGGGGG	4030	0.0	55.93013	69
TAAACAC	685	0.0	55.18209	3
CTTAAAC	560	0.0	54.387962	1
CCGTCTT	4030	0.0	54.106323	47
GCCGTCT	4070	0.0	54.09053	46
CGTCTTC	4090	0.0	54.082752	48
ATCTCGT	4150	0.0	53.63818	37
TATGCCG	4130	0.0	53.55895	43
AACACAT	785	0.0	53.502808	5
TGCCGTC	4110	0.0	53.393787	45