SRR1780951_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780951_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	329526
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	25350	7.692867937583074	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13806	4.189654230622166	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	3762	1.1416398099087781	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	3393	1.0296607854918882	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	1433	0.4348670514617966	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	828	0.2512700060086306	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	730	0.221530319307126	Illumina PCR Primer Index 9 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	464	0.14080831254589926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGGC	15	0.0022246393	69.9909	22
TCGAATG	65	0.0	64.626595	40
AGGGGGG	3990	0.0	62.10661	70
TAAACAC	785	0.0	57.954243	3
ATATCGT	80	0.0	56.884865	37
CGAATGC	75	0.0	56.009712	41
GGACCTA	25	2.390062E-4	55.992714	1
CTTAAAC	645	0.0	55.884205	1
CCGTCTT	4230	0.0	55.364212	47
GCCGTCT	4260	0.0	55.30302	46
CGTCTTC	4245	0.0	55.251045	48
AAGGGGG	4475	0.0	55.062645	69
CTTGAAA	4355	0.0	54.892117	57
TATGCCG	4335	0.0	54.74998	43
ATCTCGT	4315	0.0	54.67924	37
CGTATGC	4375	0.0	54.649483	41
ATGCCGT	4355	0.0	54.57893	44
TCGTATG	4445	0.0	54.576397	40
TCTCGTA	4390	0.0	54.54249	38
CTCGTAT	4385	0.0	54.524853	39