SRR1780950_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780950_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	212557
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	47950	22.55865485493303	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	9000	4.2341583669321645	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	939	0.4417638562832558	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	900	0.4234158366932164	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	800	0.3763696326161924	No Hit
TCTTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	333	0.15666385957649007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGATCTA	15	0.0022217215	70.00542	25
GTCGGAC	15	0.0022217215	70.00542	12
CGGGTTG	20	0.006935699	52.516415	69
TCTCGTT	20	0.006935699	52.516415	70
AGCGCTT	20	0.006935699	52.516415	68
CAGGTAT	20	0.0069421586	52.50406	1
TAAACCG	20	0.0069421586	52.50406	18
CGTCTAC	20	0.0069421586	52.50406	1
CGCTAAA	20	0.0069421586	52.50406	22
GGTATTG	20	0.0069421586	52.50406	1
ACGCTCT	20	0.0069421586	52.50406	20
GTATACC	20	0.0069421586	52.50406	2
TGTAGCG	20	0.0069421586	52.50406	17
AAGGATC	20	0.0069421586	52.50406	23
GTCGAAA	20	0.0069486224	52.491707	29
CGTGAAA	20	0.0069486224	52.491707	34
TGTACCG	20	0.0069486224	52.491707	5
TCTCGGT	1425	0.0	51.079647	43
TCGGTGG	1440	0.0	50.790585	45
CTCGGTG	1435	0.0	50.72369	44