SRR1780948_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780948_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471413
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52353	11.105548637818643	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	8079	1.713783879528142	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	901	0.1911275251212843	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	888	0.18836985827713704	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	756	0.16036893339810315	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTGCGC	25	2.390498E-4	55.995674	3
CGGTATG	20	0.006951629	52.495945	43
GCCGTAT	1265	0.0	47.03194	54
GATCTCG	1290	0.0	46.396687	41
ATCTCGG	1295	0.0	46.21755	42
GTAGATC	1320	0.0	46.13769	38
TCGCCGT	1285	0.0	46.02757	52
TCGGTGG	1320	0.0	45.867664	45
GTCGCCG	1310	0.0	45.68349	51
CTCGGTG	1310	0.0	45.68349	44
CGCCGTA	1295	0.0	45.672142	53
CGGTGGT	1330	0.0	45.522797	46
AGATCTC	1325	0.0	45.435272	40
TAGATCT	1325	0.0	45.435272	39
TGGTCGC	1310	0.0	45.416336	49
CCGTATC	1360	0.0	43.746616	55
CGTATCA	1370	0.0	43.68276	56
GTATCAT	1375	0.0	43.52391	57
TCTCGGT	1410	0.0	43.18815	43
GGTGGTC	1420	0.0	42.63755	47