SRR1780948_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780948_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471413
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	29645	6.288541045749693	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13424	2.847609208910234	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	4230	0.8973023654417677	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	3913	0.8300577200883301	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1515	0.321374251452548	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	1207	0.2560387600681356	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	1063	0.22549229656373498	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	542	0.11497349457906336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGAC	20	7.92419E-5	69.99925	45
AACGGAT	15	0.0022241815	69.99925	25
CGTATGA	75	0.0	65.33264	41
AGGGGGG	4805	0.0	60.821415	70
CAGTAGT	30	8.372983E-6	58.332714	1
GTCTTCA	80	0.0	56.874393	49
TATGCCG	5325	0.0	54.290504	43
CGTCTTC	5190	0.0	54.28651	48
ATCTCGT	5400	0.0	54.249424	37
CCGTCTT	5145	0.0	54.21711	47
TCTCGTA	5425	0.0	54.19297	38
GATCTCG	5445	0.0	54.186756	36
CTCGTAT	5400	0.0	54.18461	39
TCGTATG	5465	0.0	53.988453	40
AGATCTC	5475	0.0	53.889843	35
CTTGAAA	5340	0.0	53.87583	57
GCCGTCT	5230	0.0	53.871323	46
GTATGCC	5370	0.0	53.835552	42
CGTATGC	5430	0.0	53.82079	41
AAGATCT	5525	0.0	53.59219	34