SRR1780947_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780947_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470384
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	31403	6.67603489914623	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	15314	3.255637946868941	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	4463	0.9487992788870369	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	4083	0.8680142181706861	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	1516	0.32228987380523144	No Hit
ATTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	1126	0.23937889043845031	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	855	0.18176638661178954	RNA PCR Primer, Index 30 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	608	0.12925609714616143	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGACGA	20	7.918569E-5	70.009254	44
TCGCACA	15	0.0022229196	70.00925	31
GACGTAT	15	0.0022229196	70.00925	46
AGGGGGG	4950	0.0	61.51674	70
ACGTATG	30	8.360601E-6	58.347244	40
AAGCCGT	90	0.0	58.341038	44
CCGTCTT	4895	0.0	56.13612	47
TGACGAC	25	2.3880202E-4	56.0074	45
GCCGTCT	4915	0.0	55.978912	46
CGTCTTC	4845	0.0	55.703953	48
TATGCCG	5340	0.0	55.587868	43
CGTATGC	5275	0.0	55.277447	41
ATCTCGT	5400	0.0	55.235394	37
TCTTCTG	4665	0.0	55.21528	50
TGCCGTC	5235	0.0	55.164883	45
TCTCGTA	5420	0.0	55.096165	38
GTATGCC	5395	0.0	55.02117	42
ATGCCGT	5370	0.0	55.01658	44
TCGTATG	5390	0.0	54.94817	40
CTCGTAT	5340	0.0	54.938194	39