SRR1780946_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780946_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	512216
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	34385	6.7129882705733515	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	15958	3.115482530807316	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	5145	1.0044590563356084	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	4247	0.8291423930529307	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1938	0.37835600605994346	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	1152	0.22490511815327907	Illumina PCR Primer Index 10 (95% over 23bp)
ATTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	939	0.18332109891139675	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	635	0.12397113717650367	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTAT	25	2.8347476E-6	70.016594	39
AGGGGGG	5310	0.0	60.85247	70
TAACTCG	70	0.0	60.014233	36
ACGTATG	30	8.361727E-6	58.347168	40
GCCGTAT	55	3.6379788E-11	57.26953	46
GTCTTCA	135	0.0	57.03386	49
CCGGTTG	25	2.3869833E-4	56.01328	68
AAGGGGG	5975	0.0	53.8454	69
CCGTCTT	5610	0.0	53.83835	47
TATGCCG	5820	0.0	53.82002	43
GCCGTCT	5650	0.0	53.766907	46
CGTCTTC	5705	0.0	53.739334	48
CGTATGC	5900	0.0	53.624126	41
ATGCCGT	5860	0.0	53.572094	44
AACTCGT	85	0.0	53.542103	37
TGCCGTC	5800	0.0	53.462532	45
TCGTATG	6025	0.0	53.398552	40
TCTTCTG	5690	0.0	53.38894	50
CTCGTAT	6010	0.0	53.357075	39
GTATGCC	5875	0.0	53.316174	42