SRR1780945_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780945_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	180800
Sequences flagged as poor quality	0
Sequence length	76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51737	28.61559734513274	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	10305	5.6996681415929205	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	1166	0.6449115044247787	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	1043	0.5768805309734514	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	767	0.4242256637168142	No Hit
TCTTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	365	0.20188053097345135	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	15	0.0022152865	70.05233	29
AGCGTGG	15	0.0022152865	70.05233	27
GTTCGCA	15	0.0022152865	70.05233	35
CTATAAG	15	0.0022225953	69.994194	47
GCGCTAT	15	0.0022225953	69.994194	19
GGGATCC	15	0.0022250356	69.97484	63
CTTTATA	45	3.8380676E-10	62.19985	2
TGCCGGC	30	8.355781E-6	58.328495	19
CACGCTA	25	2.3800894E-4	56.02635	23
TACCACG	25	2.3833477E-4	56.010845	20
GTACAAC	25	2.3866096E-4	55.995354	43
GTTCTAC	20	0.006922115	52.539246	35
GACGTCC	20	0.006922115	52.539246	31
TGCGGCA	20	0.006922115	52.539246	35
AGAGTAC	20	0.006922115	52.539246	28
GTCCGGG	20	0.006922115	52.539246	34
ACGTCCG	20	0.006922115	52.539246	32
CGTCCGG	20	0.006922115	52.539246	33
GGATACC	20	0.0069297	52.524704	26
GCAAATG	20	0.0069448873	52.495647	43