SRR1780944_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780944_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	164366
Sequences flagged as poor quality	0
Sequence length	76
%GC	66

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	58340	35.49395860457759	No Hit
CTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTG	11475	6.981370843118406	No Hit
TCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGT	1270	0.7726658798048258	No Hit
ATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGGTGGTC	1133	0.6893153085187934	No Hit
CTCTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	940	0.5718944307216821	No Hit
TCTTTATACACATCTGACGCTGCCGACGACTTGGTTAGTGTAGATCTCGG	376	0.22875777228867286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	15	0.0022172513	70.033806	22
TTTCCGA	15	0.0022172513	70.033806	29
CCGACGG	15	0.0022172513	70.033806	32
AGTACGT	15	0.0022172513	70.033806	38
GTACGTG	15	0.0022172513	70.033806	39
TACGTGT	15	0.0022172513	70.033806	40
CGACGTA	15	0.0022226137	69.99117	53
TCGACGT	15	0.0022226137	69.99117	52
TCATCTG	15	0.0022252987	69.96988	8
TCAAATG	35	2.95031E-7	60.028973	40
TCGGCTT	25	2.3900683E-4	55.975906	14
GCCGAGT	25	2.3900683E-4	55.975906	58
CGGCTTA	25	2.3900683E-4	55.975906	15
GGCGCTG	25	2.3900683E-4	55.975906	14
AAAAAGG	950	0.0	54.16755	70
AAGTAAT	20	0.0069282446	52.52535	21
TCCGACG	20	0.0069282446	52.52535	31
TTCCGAC	20	0.0069282446	52.52535	30
GGGAGCG	20	0.0069282446	52.52535	20
ACGTGTC	20	0.0069282446	52.52535	41