SRR1780943_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780943_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527559
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	34581	6.554906654990248	TruSeq Adapter, Index 5 (95% over 23bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	16781	3.18087645173336	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	4928	0.9341135304297717	RNA PCR Primer, Index 5 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCG	4106	0.7783015738524033	TruSeq Adapter, Index 5 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC	1538	0.2915313737420838	RNA PCR Primer, Index 5 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTCTT	1183	0.22424032193555601	TruSeq Adapter, Index 5 (96% over 26bp)
ATTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	937	0.1776104663175114	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC	624	0.11828060937260099	RNA PCR Primer, Index 5 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	5290	0.0	60.67724	70
CGAATGC	35	2.972738E-7	60.000404	41
GTACTAG	25	2.3897676E-4	56.000378	1
TATGCCG	5880	0.0	54.70275	43
CCGTCTT	5620	0.0	54.680088	47
CGTCTTC	5670	0.0	54.56827	48
GCCGTCT	5655	0.0	54.52734	46
CGTATGC	5970	0.0	54.405727	41
TCGTATG	6060	0.0	54.358856	40
ATCTCGT	5980	0.0	54.32505	37
ATGCCGT	5900	0.0	54.28003	44
TGCCGTC	5820	0.0	54.24435	45
GATCTCG	6035	0.0	54.177994	36
CTCGTAT	6010	0.0	54.170372	39
GTCTTCT	5660	0.0	54.169975	49
TCTCGTA	6020	0.0	54.080387	38
GTATGCC	5955	0.0	54.07257	42
CTTGAAA	5860	0.0	53.759724	57
TCTTCTG	5695	0.0	53.709053	50
TGATCTC	5995	0.0	53.541714	35