SRR1780942_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780942_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436648
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	44053	10.088904563859218	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTG	6085	1.3935710228834208	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGT	693	0.15870907458639452	No Hit
ATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTGGTC	560	0.12824975724153095	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	454	0.1039739103350983	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTAG	15	0.0022240928	69.999084	54
ATGTCGT	20	0.006943229	52.51134	28
CCGAGAC	20	0.006949523	52.499313	54
CGAGACA	20	0.006949523	52.499313	55
AACTCCG	30	5.879072E-4	46.660713	7
GCCGTAT	1060	0.0	45.565445	54
ATCTCGG	1085	0.0	45.483273	42
GTAGATC	1095	0.0	45.39273	38
AGATCTC	1080	0.0	45.369778	40
TCTCGGT	1100	0.0	45.181225	43
TGGTCGC	1090	0.0	44.95354	49
CTCGGTG	1100	0.0	44.85791	44
TCGCCGT	1085	0.0	44.515545	52
CGGTGGT	1110	0.0	44.453785	46
TAGATCT	1115	0.0	44.25951	39
TCGGTGG	1130	0.0	43.97669	45
GATCTCG	1125	0.0	43.554985	41
CGTATCA	1120	0.0	43.431957	56
GTCGCCG	1120	0.0	43.124435	51
CGCCGTA	1120	0.0	43.124435	53