SRR1780942_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780942_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436648
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	23962	5.48771550539565	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9671	2.21482750407651	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	4085	0.935536175592239	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	3691	0.8453033106758762	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	1420	0.3252047415767392	RNA PCR Primer, Index 48 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1379	0.3158150272072699	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	669	0.15321265641890033	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	442	0.1012257012513512	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTC	20	7.924146E-5	69.99817	6
TACGGCA	15	0.0022242086	69.99817	2
AGGGGGG	3900	0.0	59.498444	70
ATCGTAT	130	0.0	53.844746	39
GCGAATC	20	0.006949883	52.498627	15
TTCGTAA	40	7.4749187E-7	52.498627	30
AAGGGGG	4705	0.0	49.02103	69
ATTCGTC	50	6.1852916E-8	49.004326	29
CGTCTTC	4725	0.0	48.96168	48
CCGTCTT	4640	0.0	48.8026	47
CTTGAAA	4840	0.0	48.743977	57
GCCGTCT	4725	0.0	48.739468	46
TATGCCG	4715	0.0	48.620148	43
CGTATGC	4805	0.0	48.583534	41
TCGTATG	4935	0.0	48.438446	40
GTCTTCT	4770	0.0	48.27966	49
CTTTATA	145	0.0	48.274597	2
CTCGTAT	4815	0.0	48.191887	39
TCTTCTG	4785	0.0	48.12831	50
ATCTCGT	4845	0.0	48.110195	37