SRR1780940_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780940_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414328
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	9119	2.2009132860921783	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3936	0.9499720028576395	No Hit
ATTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	2939	0.7093413913614334	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1901	0.4588152381687938	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	742	0.1790851692378985	RNA PCR Primer, Index 47 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	15	0.002221541	70.018715	37
AATGTCG	15	0.002221541	70.018715	68
CGTCTTA	45	3.8562575E-10	62.216328	48
AGGGGGG	1940	0.0	53.957718	70
CACGTAT	20	0.0069415723	52.514034	39
CGTCACT	20	0.0069415723	52.514034	37
CAGATCG	20	0.0069515216	52.49502	7
CCGTCTT	2085	0.0	50.858486	47
GCCGTCT	2145	0.0	50.577953	46
ATCTCGT	2165	0.0	50.452282	37
TATGCCG	2210	0.0	50.35722	43
GATCTCG	2170	0.0	50.336037	36
CGTATGC	2245	0.0	50.195683	41
CGTCTTC	2095	0.0	50.11458	48
GTAGATC	2200	0.0	49.949806	33
CTCGTAT	2210	0.0	49.900215	39
AGATCTC	2185	0.0	49.830254	35
TAGATCT	2190	0.0	49.716484	34
GTATGCC	2240	0.0	49.68279	42
TCGTATG	2290	0.0	49.532887	40