SRR1780939_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780939_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	150119
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	36465	24.290729354711928	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTG	5417	3.608470613313438	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGT	621	0.41367182035585104	No Hit
ATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTGGTC	479	0.3190801963775405	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	429	0.2857732865260227	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	216	0.14388585055855688	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGTG	15	0.002222973	69.985344	4
TATACTG	15	0.002222973	69.985344	5
GCGCTGC	65	0.0	59.238102	15
ACTCTGG	25	2.3828626E-4	56.00693	61
CGAACGA	20	0.006936928	52.506496	14
CAAGTGG	20	0.006936928	52.506496	47
GCTGCGA	20	0.006936928	52.506496	69
TTGAGCT	20	0.006936928	52.506496	69
ACGATTT	20	0.006936928	52.506496	30
TTGACGC	20	0.006936928	52.506496	45
TTGAACC	20	0.006936928	52.506496	34
CGACTAA	20	0.006936928	52.506496	61
ATGCCAT	20	0.006936928	52.506496	45
GCAGACT	20	0.006936928	52.506496	62
TCAACGT	20	0.006936928	52.506496	68
AGCGTTT	20	0.0069460776	52.489006	11
AACCGAC	20	0.0069460776	52.489006	58
AACTCTG	20	0.0069460776	52.489006	60
GGTAGTG	20	0.0069460776	52.489006	58
TCGCCGT	750	0.0	51.78915	52