SRR1780936_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780936_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	503224
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	22615	4.494022542645025	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	8590	1.7069933071554615	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	4014	0.797656709536906	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	3923	0.7795733112888097	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	1311	0.2605201659698266	Illumina PCR Primer Index 9 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1237	0.24581498497686913	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	702	0.1395005007710284	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGAC	15	0.0022247767	69.99523	3
AGGGGGG	3770	0.0	58.304207	70
AACTCGT	40	7.4691343E-7	52.506855	37
GGACTTG	20	0.00695165	52.49642	18
CGTCTTA	55	2.2791937E-9	50.915737	48
CTCGTAT	4330	0.0	50.445385	39
TATGCCG	4340	0.0	50.324154	43
CCGTCTT	4210	0.0	50.220333	47
TCGTATG	4415	0.0	50.187756	40
CGTCTTC	4250	0.0	50.159492	48
TCTCGTA	4345	0.0	50.11011	38
GCCGTCT	4255	0.0	50.100548	46
ATCTCGT	4290	0.0	50.018185	37
TAATTCG	35	2.085402E-5	50.001564	34
CGTATGC	4375	0.0	50.00156	41
TCTTCTG	4260	0.0	49.95461	50
GATCTCG	4330	0.0	49.798653	36
AGATCTC	4345	0.0	49.702354	35
GTATGCC	4400	0.0	49.55837	42
ATGCCGT	4400	0.0	49.16063	44