SRR1780934_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780934_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	915492
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	24322	2.656713548561866	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	8423	0.9200517317464271	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	4211	0.45997125043146203	No Hit
ATTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	3668	0.4006588806892906	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	1598	0.17455095183791886	Illumina PCR Primer Index 10 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1424	0.15554477810838324	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	946	0.1033324157939119	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	4370	55.582005	70
GCCGTCT	4740	49.181248	46
CCGTCTT	4715	48.922356	47
CGTCTTC	4820	48.72806	48
TATGCCG	4995	48.41974	43
TGCCGTC	4965	48.007355	45
CGTATGC	5075	47.934963	41
ATGCCGT	5025	47.852055	44
TCGTATG	5300	47.685757	40
CTCGTAT	5235	47.67604	39
GTATGCC	5085	47.63419	42
ATCTCGT	5360	47.08665	37
TCTCGTA	5360	46.95604	38
AAGGGGG	5170	46.913612	69
CTTGAAA	5230	46.444862	57
TATCTCG	5455	45.94578	36
CTGCTTG	4880	45.83117	54
GTCTTCT	4950	45.68051	49
TCTTCTG	4955	45.62943	50
CTTCTGC	5005	44.89388	51