SRR1780933_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780933_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310099
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	22469	7.245750550630604	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9402	3.0319349627054586	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	3751	1.2096137040106547	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	3104	1.0009706577576838	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1309	0.42212325741134277	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	1306	0.42115582443026256	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	729	0.23508621440249725	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	487	0.15704662059535826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	15	0.0022223727	70.007904	37
CAACTCG	15	0.0022223727	70.007904	36
CGAATGC	40	1.3460522E-10	70.0079	41
GGTCATA	15	0.002223795	69.99661	1
ACGAGAT	105	0.0	63.340485	27
GAGACGA	100	0.0	62.99695	24
TGACGTC	95	0.0	62.638653	45
AGGGGGG	3685	0.0	61.068962	70
CCGACTT	35	2.966517E-7	60.00678	47
CGACTTC	35	2.966517E-7	60.00678	48
AGATAGC	100	0.0	59.506714	30
CACGTAT	30	8.36013E-6	58.33992	39
ATCTGCA	25	2.3888767E-4	55.997288	52
ACGTATG	45	2.69265E-8	54.450596	40
CGTATGA	105	0.0	53.339355	41
TGCCGAC	60	8.367351E-11	52.505928	45
TCCTGAC	20	0.0069441725	52.505924	42
CGTCTAC	20	0.0069441725	52.505924	48
AAGCCGT	80	0.0	52.505924	44
GGTACGG	20	0.006948604	52.49746	1