SRR1780932_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780932_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432469
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51466	11.900506163447554	No Hit
CTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTG	6392	1.4780250145097105	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGT	712	0.16463607796165736	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGG	580	0.13411365901370964	No Hit
ATACACATCTGACGCTGCCGACGAGCTAGAAAGTGTAGATCTCGGTGGTC	549	0.12694551516987346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCAAAG	15	0.0022260915	69.98312	12
CCGAGCG	20	0.006943036	52.511627	41
CGCACTT	20	0.006943036	52.511627	43
ACGTGGA	20	0.0069557503	52.48734	49
TCGCCGT	960	0.0	46.29092	52
GTCGCCG	970	0.0	46.174427	51
CTCGGTG	985	0.0	45.847713	44
GCCGTAT	955	0.0	45.80047	54
CGGTGGT	995	0.0	45.72819	46
TGGTCGC	980	0.0	45.703266	49
TCGGTGG	1000	0.0	45.510075	45
AGATCTC	1010	0.0	44.009464	40
ATCTCGG	1015	0.0	43.8028	42
GATCTCG	1015	0.0	43.8028	41
CGTATCA	1000	0.0	43.73945	56
CGCCGTA	1015	0.0	43.437798	53
TCTCGGT	1035	0.0	43.29461	43
GTAGATC	1030	0.0	43.164894	38
GTATCAT	1035	0.0	42.936504	57
GGTGGTC	1075	0.0	42.325165	47