SRR1780932_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780932_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432469
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	20763	4.8010377622442295	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10158	2.348838876312522	No Hit
ATTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	9170	2.1203831950960645	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	3852	0.8906996802082923	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	1563	0.36141318799728994	TruSeq Adapter, Index 12 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	933	0.21573800665481224	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	619	0.14313164643014875	No Hit
CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	488	0.1128404579287764	TruSeq Adapter, Index 12 (95% over 21bp)
CTATTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	459	0.1061347749780909	No Hit
TATTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	449	0.1038224705123373	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAA	15	0.0022243715	69.99676	28
CAGTGGA	20	7.924851E-5	69.99676	27
TGCCGAC	55	0.0	63.633423	45
AGGGGGG	4365	0.0	61.58503	70
GCCGACT	70	0.0	60.0111	46
CGACTTC	70	0.0	60.0111	48
CCGACTT	60	1.8189894E-12	58.344128	47
CTCGAAA	25	2.3885448E-4	56.003887	39
ATCGTAT	140	0.0	55.003815	39
CACGTAT	65	3.6379788E-12	53.84989	39
CGTCTTA	85	0.0	53.539318	48
CGTATGA	265	0.0	52.827744	41
AACGAAG	20	0.006950392	52.49757	29
ACGTATG	75	0.0	51.33689	40
ATATCGT	130	0.0	51.157394	37
TGACGTC	240	0.0	51.039307	45
AGCGTCA	55	2.2828317E-9	50.90674	3
GCCGTCT	5125	0.0	50.75085	46
CCGTCTT	5020	0.0	50.696632	47
CGTCTTC	5145	0.0	50.689648	48