SRR1780922_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780922_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	305882
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	21275	6.955296486880562	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	2929	0.9575587971832275	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	1672	0.5466160153261715	No Hit
CATATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	1222	0.39950046096207037	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	479	0.15659633453423216	No Hit
CTTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	451	0.14744247781824366	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	443	0.14482709018510406	RNA PCR Primer, Index 15 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	379	0.12390398911998744	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCGCG	15	0.002222412	70.00736	12
TACGGAA	15	0.0022238537	69.99592	28
AAGCCGT	30	1.0221811E-7	69.99592	44
AGGGGGG	2730	0.0	65.51971	70
CGTCTAC	45	3.8380676E-10	62.21859	48
ATATCGT	75	0.0	60.663128	37
ATCGTAT	95	0.0	58.943928	39
ACGTATG	30	8.36835E-6	58.32993	40
GCAGCGT	25	2.3870135E-4	56.005886	1
AGCGTCA	25	2.3889431E-4	55.99673	3
GCCGTCT	3475	0.0	54.083176	46
CGTCTTC	3500	0.0	53.99685	48
CGTATGC	3615	0.0	53.92493	41
CCGTCTT	3450	0.0	53.764977	47
TATGCCG	3570	0.0	53.72236	43
CTTGAAA	3525	0.0	53.721962	57
TCGTATG	3710	0.0	53.676113	40
ATGCCGT	3545	0.0	53.60759	44
TCTCGTA	3600	0.0	53.566315	38
TGCCGTC	3535	0.0	53.56123	45