SRR1780920_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780920_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58407
Sequences flagged as poor quality	0
Sequence length	76
%GC	89

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39608	67.81378944304622	No Hit
CTTATACACATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTG	323	0.55301590562775	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	134	0.22942455527590871	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	95	0.16265173694933827	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	84	0.14381837793415173	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	76	0.1301213895594706	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	63	0.10786378345061379	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGGGT	15	0.0022046403	70.07719	54
CCGGGTC	15	0.0022046403	70.07719	55
GTCTGGC	20	7.856284E-5	70.017136	10
GCTGCGG	15	0.0022121582	70.017136	17
GCGTCTG	15	0.0022121582	70.017136	8
CGCGTCT	15	0.0022121582	70.017136	7
CGTCTGG	20	7.856284E-5	70.017136	9
CTCGGTG	30	8.26924E-6	58.347614	44
TCTGGCG	25	2.3693434E-4	56.01371	11
TCTCGGT	25	2.3693434E-4	56.01371	43
GATCTCG	25	2.3693434E-4	56.01371	41
AGATCTC	25	2.3693434E-4	56.01371	40
GTCGGGC	25	2.3693434E-4	56.01371	10
TCGGGCG	25	2.3693434E-4	56.01371	11
GTCGCCG	45	2.6395355E-8	54.45777	51
TGCGCGT	20	0.0069124824	52.51285	5
CTCTAGG	20	0.0069124824	52.51285	2
CATTAAA	40	7.349081E-7	52.51285	61
CTTGTGC	20	0.0069124824	52.51285	1
TGGCGCT	20	0.0069124824	52.51285	13