SRR1780919_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780919_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	242545
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	21349	8.802077964913728	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCG	2901	1.1960667092704447	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	1967	0.8109835288297017	No Hit
CATATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	1174	0.48403389061823576	No Hit
ATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGTCTT	519	0.21398091075882827	RNA PCR Primer, Index 38 (95% over 22bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	493	0.20326125048959987	No Hit
CTTATACACATCTCCGCGCCCACGAGACATTTATCTATCTCGTATGCCGT	476	0.19625224185202744	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	338	0.13935558349996907	No Hit
CTAATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	302	0.12451297697334514	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	286	0.1179162629615123	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAGTTT	15	0.0022238474	69.99154	12
CGAATGC	55	0.0	63.628674	41
AGGGGGG	2890	0.0	63.26253	70
CGTATGA	60	1.8189894E-12	58.326286	41
ATATCGT	55	3.6379788E-11	57.26581	37
GCCGTAT	25	2.3862557E-4	56.004784	46
TCGAATG	75	0.0	55.99324	40
GCCGTCT	3595	0.0	54.135357	46
CGTCTTC	3585	0.0	54.09109	48
CCGTCTT	3565	0.0	54.00181	47
ATGCCGT	3665	0.0	53.85434	44
TATGCCG	3640	0.0	53.839653	43
CGTATGC	3650	0.0	53.78802	41
TCGTATG	3710	0.0	53.767086	40
TGCCGTC	3670	0.0	53.601315	45
TCTCGTA	3680	0.0	53.53973	38
CTCGTAT	3685	0.0	53.467083	39
GTATGCC	3655	0.0	53.4272	42
CTTGAAA	3645	0.0	53.381752	57
GTCTTCT	3675	0.0	53.337887	49