SRR1780918_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780918_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186751
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23944	12.821350354214973	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	484	0.25916862560307574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	15	0.002223092	69.99116	3
CGTTAAT	20	0.0069390777	52.50743	25
ATCTCGC	20	0.0069464343	52.49337	11
TCCCAAT	20	0.0069464343	52.49337	40
GCCGTAT	55	2.2664608E-9	50.916298	54
TGGTCGC	60	4.9076334E-9	46.66077	49
TCGGTGG	85	1.8189894E-12	45.30053	45
GTCGCCG	65	9.93532E-9	43.083023	51
CGTATCA	65	9.93532E-9	43.083023	56
CGGTGGT	85	5.638867E-11	41.1823	46
TCGCCGT	60	2.5813642E-7	40.839115	52
CGCCGTA	60	2.5813642E-7	40.839115	53
CTCGGTG	90	1.03682396E-10	38.894394	44
GTATCAT	85	2.5520421E-9	37.06407	57
GGTACTA	40	0.0024094167	35.014336	1
CGCCTTT	40	0.002412587	35.004955	22
TCTCGGT	100	3.2196112E-10	35.004955	43
CCGCCTT	40	0.002412587	35.004955	21
GTAGATC	90	4.472895E-9	34.995583	38
TCGCACC	40	0.0024157604	34.99558	14