SRR1780918_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780918_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186751
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	14575	7.804509748274441	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCG	2171	1.1625105086452014	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	1235	0.661308373181402	No Hit
CATATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	1221	0.6538117600441229	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	847	0.4535450948053825	No Hit
ATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGTCTT	390	0.2088342231099164	TruSeq Adapter, Index 1 (95% over 21bp)
CTTATACACATCTCCGCGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	271	0.14511301144304448	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	234	0.12530053386594983	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCCGT	30	1.0198892E-7	69.997055	44
CCGGTCG	15	0.0022223494	69.997055	9
CGAATGC	15	0.0022247117	69.97831	41
AGGGGGG	1990	0.0	63.12114	70
GCCGTCA	45	3.8198777E-10	62.2196	46
CTCGTAA	40	1.0610165E-8	61.24742	39
AGCCGTC	35	2.963243E-7	59.997475	45
TCGTAAG	55	3.6379788E-11	57.254982	40
CAGTCCG	50	9.767973E-10	55.982647	28
TGACGTC	45	2.6881025E-8	54.44215	45
CGTATGA	45	2.6937414E-8	54.427574	41
ATCTCGT	2500	0.0	53.897736	37
GATCTCG	2530	0.0	53.811966	36
TCTCGTA	2550	0.0	53.801655	38
CGTCTTC	2505	0.0	53.790154	48
CGATCTC	2525	0.0	53.77991	35
GCGATCT	2535	0.0	53.70583	34
TATGCCG	2515	0.0	53.70105	43
TGCCGTC	2525	0.0	53.641304	45
CCGTCTT	2500	0.0	53.617744	47