SRR1780916_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780916_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169360
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	15860	9.364666981577704	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCG	2348	1.3863958431743033	No Hit
CATATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	1322	0.7805857345299952	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	1309	0.7729097779877184	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1033	0.6099433160132263	No Hit
ATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGTCTT	400	0.23618327822390173	Illumina PCR Primer Index 4 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	352	0.20784128483703354	No Hit
CTTATACACATCTCCGCGCCCACGAGACTTCTACCAATCTCGTATGCCGT	263	0.1552905054322154	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTACCACTCTCGTATGCCGT	170	0.10037789324515824	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	15	0.0022216581	69.9997	34
CGTCTTA	15	0.0022216581	69.9997	48
ACGTCAC	15	0.0022216581	69.9997	43
CGGTACA	15	0.0022216581	69.9997	51
TACGTAA	15	0.0022216581	69.9997	10
AACACGT	15	0.0022216581	69.9997	37
CGAATGC	45	3.8198777E-10	62.22196	41
ATCTCGA	40	1.0599251E-8	61.249744	37
AGGGGGG	2050	0.0	60.950962	70
AATATCG	70	0.0	59.99975	36
TATCGTA	80	0.0	56.874763	38
GACTTAT	25	2.3852495E-4	55.999763	26
ATATCGT	75	0.0	55.999763	37
GCCGACT	25	2.3852495E-4	55.999763	46
TTGCGAT	25	2.3852495E-4	55.999763	16
GCCGTAT	25	2.3852495E-4	55.999763	46
ATCGTAT	65	3.6379788E-12	53.84593	39
ACAACGA	20	0.0069419728	52.499783	19
GCAACGT	20	0.0069419728	52.499783	40
TCGTGTT	20	0.0069419728	52.499783	34