SRR1780913_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780913_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	372079
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	20272	5.448305333007237	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCG	3155	0.8479382066711638	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	2068	0.555795946559736	No Hit
CATATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	1641	0.44103537152056416	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1420	0.3816393830342481	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGCCCGAATCTCGTATGCCGT	1275	0.34266916434413125	No Hit
ATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGTCTT	424	0.11395429465247972	RNA PCR Primer, Index 40 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGTT	15	0.0022234644	70.002014	38
ACGTATG	20	7.92045E-5	70.002014	40
TCGAAAG	20	7.92045E-5	70.002014	40
GCCCGAC	20	7.92045E-5	70.002014	31
AGGGGGG	2760	0.0	62.773544	70
ATGACCG	35	2.969864E-7	60.001728	29
TGCCGTA	65	0.0	59.232475	45
ATCGTAT	90	0.0	58.335014	39
CTCGAAA	25	2.3885877E-4	56.001617	39
CCGACTC	45	2.7021088E-8	54.431377	33
CGACTCT	45	2.7021088E-8	54.431377	34
CGTATGC	3760	0.0	52.780773	41
GCCGTCT	3565	0.0	52.722416	46
CCCGTCC	20	0.0069438755	52.508568	57
TCGTCCA	20	0.0069475686	52.50151	16
TACTCGA	20	0.0069475686	52.50151	2
TAAGACG	40	7.4690615E-7	52.50151	43
GATTGTC	20	0.0069512636	52.494453	7
CCGTCTT	3575	0.0	52.47703	47
TCGTATG	3800	0.0	52.4094	40