SRR1780912_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780912_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	247957
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	16872	6.804405602584319	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	2424	0.9775888561323132	No Hit
CATATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	1373	0.5537250410353408	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	1363	0.5496920837080622	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	959	0.38676060768601006	No Hit
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	373	0.1504293083074888	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	341	0.13752384486019753	RNA PCR Primer, Index 16 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGCCCGCCGTGCATCTCGTATGCCGT	307	0.12381178994745057	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	287	0.11574587529289353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCGT	15	0.0022235017	69.99476	32
AGACCGA	30	1.0215081E-7	69.99476	25
TGCCGTA	15	0.0022235017	69.99476	45
GACCGAC	25	2.8356844E-6	69.99475	26
AGGGGGG	2615	0.0	61.588108	70
CGACGTG	35	2.967936E-7	59.995506	29
ATCGTAT	35	2.967936E-7	59.995506	39
CCGTGCT	30	8.364515E-6	58.328968	31
CAACTCG	30	8.364515E-6	58.328968	36
GCCGTAT	30	8.364515E-6	58.328968	46
AAGCCGT	80	0.0	56.87074	44
CGTCTTC	3090	0.0	53.809414	48
GCCGTCT	3145	0.0	53.747963	46
TATGCCG	3225	0.0	53.71691	43
CCGTCTT	3125	0.0	53.53199	47
TCGTATG	3290	0.0	53.50663	40
CGTATGC	3245	0.0	53.49368	41
TCTCGTA	3275	0.0	53.217384	38
CATCTCG	3245	0.0	53.170128	36
ATGCCGT	3250	0.0	53.088333	44