SRR1780910_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780910_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	231110
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	18800	8.134654493531219	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	2867	1.240534810263511	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	1916	0.8290424473194582	No Hit
CATATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	1697	0.7342823763575786	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1525	0.6598589416295271	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	465	0.20120289039851155	RNA PCR Primer, Index 15 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	334	0.14451992557656526	No Hit
CTTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	265	0.11466401280775387	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACTT	30	1.02138074E-7	69.99286	47
ACCGTCC	20	7.919238E-5	69.99286	8
AGGGGGG	2425	0.0	63.698128	70
TAACTCG	45	2.6884663E-8	54.45067	36
GCCGACT	40	7.463368E-7	52.494644	46
CCGAGTT	20	0.006947847	52.494644	44
GCCGTCT	3085	0.0	52.40956	46
CCGTCTT	3065	0.0	52.409008	47
CGTCTTC	3080	0.0	52.392357	48
TATGCCG	3145	0.0	52.299908	43
CTGCTTG	3055	0.0	52.1562	54
CTTGAAA	3125	0.0	52.085957	57
ATGCCGT	3155	0.0	52.02322	44
TGCCGTC	3130	0.0	51.9915	45
GTATGCC	3160	0.0	51.83015	42
TCGTATG	3235	0.0	51.721523	40
CGTATGC	3205	0.0	51.659576	41
GCTTGAA	3150	0.0	51.45033	56
CTCGTAT	3240	0.0	51.425632	39
GTCTTCT	3155	0.0	51.368793	49