Basic Statistics
Measure | Value |
---|---|
Filename | SRR1780907_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 228682 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT | 17675 | 7.729073560665029 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCG | 2897 | 1.2668246735641633 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC | 1750 | 0.7652548079866365 | No Hit |
CATATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT | 1642 | 0.7180276541223184 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 1438 | 0.6288208079341618 | No Hit |
ATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGTCTT | 528 | 0.23088830778111089 | RNA PCR Primer, Index 38 (95% over 22bp) |
TCTTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC | 388 | 0.16966792314217996 | No Hit |
CTTATACACATCTCCGCGCCCACGAGACATTTATCTATCTCGTATGCCGT | 289 | 0.1263763654332217 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCGAC | 25 | 2.8330287E-6 | 70.002846 | 45 |
TCTGTCG | 20 | 7.922045E-5 | 69.98753 | 8 |
ATATCGT | 40 | 1.0581061E-8 | 61.279297 | 37 |
AGGGGGG | 2545 | 0.0 | 60.10067 | 70 |
TCTGCCG | 25 | 2.389075E-4 | 55.99003 | 43 |
GTCTGCC | 25 | 2.389075E-4 | 55.99003 | 42 |
ATTAAGC | 20 | 0.0069378265 | 52.51362 | 16 |
TATGCCA | 20 | 0.006943834 | 52.502132 | 44 |
CTGCCGT | 20 | 0.006943834 | 52.502132 | 44 |
CCGACTT | 40 | 7.4556556E-7 | 52.502132 | 47 |
TCAGTCG | 20 | 0.006949845 | 52.490646 | 9 |
AGCGTCA | 20 | 0.0069558597 | 52.47917 | 3 |
ATCTCGT | 3285 | 0.0 | 52.231976 | 37 |
CCGTCTT | 3145 | 0.0 | 52.196075 | 47 |
TCGTATG | 3300 | 0.0 | 52.195354 | 40 |
CGTCTTC | 3175 | 0.0 | 52.132442 | 48 |
TCTCGTA | 3285 | 0.0 | 52.12538 | 38 |
GCCGTCT | 3175 | 0.0 | 52.033607 | 46 |
TATGCCG | 3195 | 0.0 | 52.025166 | 43 |
CGTATGC | 3245 | 0.0 | 52.001167 | 41 |