SRR1780907_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780907_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228682
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	17675	7.729073560665029	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCG	2897	1.2668246735641633	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	1750	0.7652548079866365	No Hit
CATATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	1642	0.7180276541223184	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1438	0.6288208079341618	No Hit
ATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGTCTT	528	0.23088830778111089	RNA PCR Primer, Index 38 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	388	0.16966792314217996	No Hit
CTTATACACATCTCCGCGCCCACGAGACATTTATCTATCTCGTATGCCGT	289	0.1263763654332217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGAC	25	2.8330287E-6	70.002846	45
TCTGTCG	20	7.922045E-5	69.98753	8
ATATCGT	40	1.0581061E-8	61.279297	37
AGGGGGG	2545	0.0	60.10067	70
TCTGCCG	25	2.389075E-4	55.99003	43
GTCTGCC	25	2.389075E-4	55.99003	42
ATTAAGC	20	0.0069378265	52.51362	16
TATGCCA	20	0.006943834	52.502132	44
CTGCCGT	20	0.006943834	52.502132	44
CCGACTT	40	7.4556556E-7	52.502132	47
TCAGTCG	20	0.006949845	52.490646	9
AGCGTCA	20	0.0069558597	52.47917	3
ATCTCGT	3285	0.0	52.231976	37
CCGTCTT	3145	0.0	52.196075	47
TCGTATG	3300	0.0	52.195354	40
CGTCTTC	3175	0.0	52.132442	48
TCTCGTA	3285	0.0	52.12538	38
GCCGTCT	3175	0.0	52.033607	46
TATGCCG	3195	0.0	52.025166	43
CGTATGC	3245	0.0	52.001167	41