SRR1780906_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780906_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117397
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	6276	5.3459628440249745	No Hit
CATATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	6225	5.302520507338348	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCG	1905	1.6226990468240245	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1077	0.9173999335587792	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	618	0.5264189033791323	No Hit
CATAAACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	563	0.47956932459943613	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	428	0.3645749039583635	No Hit
CAAATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	280	0.23850694651481721	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	269	0.229137030758878	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	246	0.2095453887237323	No Hit
CATATACACATCTCCGCGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	157	0.1337342521529511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCCG	15	0.0022144446	70.04351	10
ATCGTAT	25	2.8218328E-6	70.01365	39
ATATCGT	15	0.002218196	70.01364	37
GCGATCG	15	0.002218196	70.01364	36
TGGTTAA	15	0.0022219522	69.983795	34
AGACGCA	15	0.0022257129	69.95399	2
TACGCGA	15	0.0022257129	69.95399	31
GTACGCG	15	0.0022257129	69.95399	30
AGGGGGG	1820	0.0	65.918175	70
CGAGACC	50	1.4551915E-11	63.012283	15
ATATACA	905	0.0	62.99724	2
CATATAC	900	0.0	62.958584	1
CTCTCGT	45	3.8016879E-10	62.234352	37
CTCGTAA	40	1.0544682E-8	61.261936	39
AGCCGTC	40	1.0581061E-8	61.235825	45
CGACTTC	40	1.0581061E-8	61.235825	48
TCACCGA	35	2.9401417E-7	60.037296	11
CGTATGA	70	0.0	59.986115	41
CGCGATA	35	2.9575494E-7	59.986115	33
CGTCTTA	30	8.344909E-6	58.31983	48